API Documentation

• pcnaDeep
  • pcnaDeep.predictor
  • pcnaDeep.refiner
  • pcnaDeep.resolver
  • pcnaDeep.tracker
  • pcnaDeep.evaluate
    • pcna_ctcEvaluator
      • pcna_ctcEvaluator.__init__()
      • pcna_ctcEvaluator.set_evSoft()
      • pcna_ctcEvaluator.generate_raw()
      • pcna_ctcEvaluator.generate_ctc()
      • pcna_ctcEvaluator.init_ctc_dir()
      • pcna_ctcEvaluator.evaluate()
  • pcnaDeep.split
  • pcnaDeep.correct
  • Subpackages
    • pcnaDeep.data
      • pcnaDeep.data.annotate
        • relabel_trackID()
        • label_by_track()
        • get_lineage_txt()
        • break_track()
        • separate()
        • save_seq()
        • findM()
        • check_continuous_track()
      • pcnaDeep.data.preparePCNA
        • load_PCNA_from_json()
        • load_PCNAs_json()
      • pcnaDeep.data.utils
        • json2mask()
        • mask2json()
        • getDetectInput()
        • retrieve()
        • mt_dic2mt_lookup()
        • get_outlier()
        • deduce_transition()
        • find_daugs()
        • filter_edge()
        • expand_bbox()
        • align_table_and_mask()
        • merge_obj_tables()